ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10233-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTGCCGATGCAGAAATCAGCAGCGA miRNA* GCTGCCGATGCAGAAATCGGCAGCGAAA mismatches: 7 bulges: 0 |
pre-miRNA
TGCGTCGCTGCCGATGCAGAAATCGGCAGCGAAAACGGCGTTGCTGCCGATCCAGAAATCAGCAGCGAAAACTGCATCGCTGCCGATGCAGAAATCAGCA
GCGAAAACTGCA
dot-bracket secondary structure
.((((((((((.(((......(((((((((((...(((..(((((((.(((......))).)))))))...)))..)))))))))))......))).)))
))))....))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TGCGTCGCTGCCGATGCAGAAATCGGCAGCGAAAACGGCGTTGCTGCCGATCCAGAAATCAGCAGCGAAAACTGCATCGCTGCCGATGCAGAAATCAGCA
GCGAAAACTGCA
dot-bracket secondary structure
.((((((((((.(((......(((((((((((...(((..(((((((.(((......))).)))))))...)))..)))))))))))......))).)))
))))....))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10791-akr: 4e-59 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10791-akr from PMRD (MNEST052613) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
