ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR395
source: PMRD, original name: ptc-miRf10238-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGTGTTTGGGGGAACTC miRNA* GTTCCTCTGAGCACTTCAAT mismatches: 2 bulges: 0 |
pre-miRNA
GTGTCCCCTAGAGTTCCTCTGAGCACTTCAATGGGGATCTTCCATCGACCTGAAAGAGTATTATCATTCCTACTGAAGTGTTTGGGGGAACTCCTGGTGT
CAT
dot-bracket secondary structure
(((.(.((..(((((((((..(((((((((.((((((((((.((......)).)))).........)))))).)))))))))..)))))))))..)).).
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTGTCCCCTAGAGTTCCTCTGAGCACTTCAATGGGGATCTTCCATCGACCTGAAAGAGTATTATCATTCCTACTGAAGTGTTTGGGGGAACTCCTGGTGT
CAT
dot-bracket secondary structure
(((.(.((..(((((((((..(((((((((.((((((((((.((......)).)))).........)))))).)))))))))..)))))))))..)).).
)))
SIMILARITIES| miRBase ptc-MIR395j: 4e-53 PMRD ptc-miR395j: 4e-53 microPC miR395: 0.00008 | UniProt no hits RFAM mir-395: 4e-50 |
Identical with: ptc-MIR395i from miRBase (MNEST041433) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
