ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10247-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATACTGAAGCTCCGATGACGA miRNA* ATTATCGAAGCTTTAGTATACC mismatches: 4 bulges: 0 |
pre-miRNA
GGTGTTATTATCGAAGCTTTAGTATACCTCCAGAGTCTCTTTTTTGTTTCTTTTTTTTTTCTCCTCCTTGTAATTTGTGAAGAGAGAGGAGAGAGAGAGA
AAAGTAAAAAAAATGAAAAGATCCTGGATACATACTGAAGCTCCGATGACGATACC
dot-bracket secondary structure
(((((..((((((.(((((((((((...(((((..(((.(((....(((..((((((((((((((((((....(((....)))..)))))).))))))))
))))..))).....))).)))..)))))...))))))))))).))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGTGTTATTATCGAAGCTTTAGTATACCTCCAGAGTCTCTTTTTTGTTTCTTTTTTTTTTCTCCTCCTTGTAATTTGTGAAGAGAGAGGAGAGAGAGAGA
AAAGTAAAAAAAATGAAAAGATCCTGGATACATACTGAAGCTCCGATGACGATACC
dot-bracket secondary structure
(((((..((((((.(((((((((((...(((((..(((.(((....(((..((((((((((((((((((....(((....)))..)))))).))))))))
))))..))).....))).)))..)))))...))))))))))).))))))..)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
