ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10378-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCCAGACCCAAGTTCTTT miRNA* GTAACTTGGGTCTAACGCCC mismatches: 3 bulges: 0 |
pre-miRNA
CTAGACCCAAGTAACTTGGGTCTAACGCCCCTGTCAAATCCAAGTTTCTTGGGTATGACATAACTGACCTAAGTTTCGTGAGTTTGGTGGTGCCAGACCC
AAGTTCTTTGGGTATGG
dot-bracket secondary structure
(((.(((((((.(((((((((((..((((((.((((.(((((((...))))))).))))..((((.((.........)).)))).)).))))..))))))
))))).))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTAGACCCAAGTAACTTGGGTCTAACGCCCCTGTCAAATCCAAGTTTCTTGGGTATGACATAACTGACCTAAGTTTCGTGAGTTTGGTGGTGCCAGACCC
AAGTTCTTTGGGTATGG
dot-bracket secondary structure
(((.(((((((.(((((((((((..((((((.((((.(((((((...))))))).))))..((((.((.........)).)))).)).))))..))))))
))))).))))))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10323-akr: 3e-32 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
