ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10381-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTATTAAGCAAGTCTCGAT miRNA* CGAGACATGCTTAATACTTAC mismatches: 1 bulges: 0 |
pre-miRNA
GGGATTGGTATCGAGACATGCTTAATACTTACCAATGTTGCTAACTTACCAATCTCCATGTTTCCAAAACCATGATGAAGGCAAGTATTAAGCAAGTCTC
GATATGTATCCC
dot-bracket secondary structure
(((((..((((((((((.((((((((((((.((...((.....)).......((..((((..........))))..)).)).)))))))))))).)))))
)))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GGGATTGGTATCGAGACATGCTTAATACTTACCAATGTTGCTAACTTACCAATCTCCATGTTTCCAAAACCATGATGAAGGCAAGTATTAAGCAAGTCTC
GATATGTATCCC
dot-bracket secondary structure
(((((..((((((((((.((((((((((((.((...((.....)).......((..((((..........))))..)).)).)))))))))))).)))))
)))))..)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11699-akr: 4e-59 microPC no hits | UniProt no hits RFAM snoR71: 0.00000000003 |
Identical with: ptc-miRf10393-akr from PMRD (MNEST052215) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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