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ABOUT THIS RECORD
ID:
MNEST052212
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10390-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGTCATGGATCCGGGAATCGGGT
miRNA*
CCGGGATTCGGGTCGTGACAGG
mismatches:
3
bulges:
1
View larger
pre-miRNA
GTCATGGAC
CCGGGATTCGGGTCGTGACAGG
AACCTTGGAGGGGAACCTTGCCTATGTGCC
GGTCATGGATCCGGGAATCGGGT
CGTGAC
dot-bracket secondary structure
((((((.((
((((..(((((((((((((.((
.((...(((((....)))..))...)).))
.))))).))))))))..))))))
))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11697-akr
:
4e-46
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11697-akr
from PMRD (
MNEST053519
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
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