ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10398-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGCGATGCAGTTTTCGCTGCCGA miRNA* AGCAGCGACGCAGTTTTCGCTGCCGA mismatches: 4 bulges: 2 |
pre-miRNA
AATCAGCAGCGACGCAGTTTTCGCTGCCGATGCAGAAATCGGCAGCGACGCAGTTTTCGCTGCCGATTCTGGACTGGGCAGCGATGCAGTTTTCGCTGCC
GATT
dot-bracket secondary structure
((((.(((((((.((.((..((((((((.((.(((((.((((((((((........))))))))))))))).).).)))))))).)).))..))))))).
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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AATCAGCAGCGACGCAGTTTTCGCTGCCGATGCAGAAATCGGCAGCGACGCAGTTTTCGCTGCCGATTCTGGACTGGGCAGCGATGCAGTTTTCGCTGCC
GATT
dot-bracket secondary structure
((((.(((((((.((.((..((((((((.((.(((((.((((((((((........))))))))))))))).).).)))))))).)).))..))))))).
))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10134-akr: 5e-49 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
