ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10408-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCTGGCAGCAGGACCCAA miRNA* GGGTTTAGCGGCCAAGCCAAA mismatches: 5 bulges: 1 |
pre-miRNA
TAGCCTTGGGTTTAGCGGCCAAGCCAAACCTAAAATAGCCTTGGGTCTGGCGGCCAAGAAGTTCAAAAGATGTTGGGTTTAGCTGGGTAACCGGATTCAA
TGCTAGTAGGTTCTGCTGGCAGCAGGACCCAACGCTA
dot-bracket secondary structure
((((.(((((((..((.((((.((..((((((...((((.((((((((((..(((...(((..(((......)))..))).....)))..))))))))))
.)))).))))))..)))))).))..))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TAGCCTTGGGTTTAGCGGCCAAGCCAAACCTAAAATAGCCTTGGGTCTGGCGGCCAAGAAGTTCAAAAGATGTTGGGTTTAGCTGGGTAACCGGATTCAA
TGCTAGTAGGTTCTGCTGGCAGCAGGACCCAACGCTA
dot-bracket secondary structure
((((.(((((((..((.((((.((..((((((...((((.((((((((((..(((...(((..(((......)))..))).....)))..))))))))))
.)))).))))))..)))))).))..))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10193-akr: 6e-74 microPC no hits | UniProt no hits RFAM MIR474: 3e-36 |
Identical with: ptc-miRf10193-akr from PMRD (MNEST052015) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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