ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10415-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGCGAATTAGTATTCGCTGC miRNA* AGCGAATTTGGGATTCGCTGTCAA mismatches: 4 bulges: 1 |
pre-miRNA
GTTCTGCAGCGAATTTGGGATTCGCTGTCAAATTCTGTGTTCTGCACCGAATTTGAGATTCGCTGTCAAAGTTGTATTGTCTGCAGCGAATTATAATTTT
CTGCCGAAATTGAGTTGTTTGCAGCGAATTAGTATTCGCTGCTGAAT
dot-bracket secondary structure
((((.(((((((((....((((((((((..(((((....(((.(((..(((((...(((((((((((((.......)))...))))))))))..))))).
.))).)))...)))))....))))))))))...))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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GTTCTGCAGCGAATTTGGGATTCGCTGTCAAATTCTGTGTTCTGCACCGAATTTGAGATTCGCTGTCAAAGTTGTATTGTCTGCAGCGAATTATAATTTT
CTGCCGAAATTGAGTTGTTTGCAGCGAATTAGTATTCGCTGCTGAAT
dot-bracket secondary structure
((((.(((((((((....((((((((((..(((((....(((.(((..(((((...(((((((((((((.......)))...))))))))))..))))).
.))).)))...)))))....))))))))))...))))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12208-akr: 0.000000000008 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
