ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10421-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCGATGAACCGCTGCCTC miRNA* TGCAGAGGTTTATCGATCGG mismatches: 2 bulges: 0 |
pre-miRNA
GAAGCACTGGATGCAGAGGTTTATCGATCGGTTCGTGTTGTTCGTGTAAAACAAAAAAATCTTCAGGAAAAGATCGATGAACCGCTGCCTCCAGTGTCTT
C
dot-bracket secondary structure
(((((((((((.((((.((((((((((((..(((.((...((..((.....))..))......)).)))..)))))))))))).)))).))))))).)))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAAGCACTGGATGCAGAGGTTTATCGATCGGTTCGTGTTGTTCGTGTAAAACAAAAAAATCTTCAGGAAAAGATCGATGAACCGCTGCCTCCAGTGTCTT
C
dot-bracket secondary structure
(((((((((((.((((.((((((((((((..(((.((...((..((.....))..))......)).)))..)))))))))))).)))).))))))).)))
)
SIMILARITIES| miRBase ptc-MIR162c: 5e-40 PMRD ptc-miRf10676-akr: 5e-40 microPC miR162: 0.000000000005 | UniProt no hits RFAM MIR162_2: 8e-33 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
