ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10422-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCGCTGCCTCCAGTGTCT miRNA* CACTGGATGCAGAGGTTTA mismatches: 2 bulges: 1 |
pre-miRNA
GGGAAGCACTGGATGCAGAGGTTTATCGATCGGTTCGTGTTGTTCGTGTAAAACAAAAAAATCTTCAGGAAAAGATCGATGAACCGCTGCCTCCAGTGTC
TTCTC
dot-bracket secondary structure
(((((((((((((.((((.((((((((((((..(((.((...((..((.....))..))......)).)))..)))))))))))).)))).))))))).)
)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGGAAGCACTGGATGCAGAGGTTTATCGATCGGTTCGTGTTGTTCGTGTAAAACAAAAAAATCTTCAGGAAAAGATCGATGAACCGCTGCCTCCAGTGTC
TTCTC
dot-bracket secondary structure
(((((((((((((.((((.((((((((((((..(((.((...((..((.....))..))......)).)))..)))))))))))).)))).))))))).)
)))))
SIMILARITIES| miRBase ptc-MIR162c: 2e-42 PMRD ptc-miRf10675-akr: 2e-42 microPC miR162: 0.000000000005 | UniProt no hits RFAM MIR162_2: 8e-33 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
