ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10425-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGTTTGGCTCCACCACCA miRNA* GTTGGTGTCGCTAGACTCAATT mismatches: 2 bulges: 1 |
pre-miRNA
TGGGTCTGGTTGGTGTCGCTAGACTCAATTGCCTTGCCCACCAGACTGAAGGATATGGGGTCTGGCTCCACAGCAAGACCTAATTGCATTTGAGTTTGGC
TCCACCACCATACCCA
dot-bracket secondary structure
.((((.((((.((((..(((((((((((.(((........((........)).....((((((.(((....))).))))))....))).)))))))))))
..)))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGGGTCTGGTTGGTGTCGCTAGACTCAATTGCCTTGCCCACCAGACTGAAGGATATGGGGTCTGGCTCCACAGCAAGACCTAATTGCATTTGAGTTTGGC
TCCACCACCATACCCA
dot-bracket secondary structure
.((((.((((.((((..(((((((((((.(((........((........)).....((((((.(((....))).))))))....))).)))))))))))
..)))))))).)))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10847-akr: 2e-61 microPC no hits | UniProt no hits RFAM MIR474: 0.00003 |
Identical with: ptc-miRf10426-akr from PMRD (MNEST052248) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
