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ABOUT THIS RECORD
ID:
MNEST052248
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10426-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGCTCCACCACCATACCCA
miRNA*
GGTCTGGTTGGTGTCGCTAGAC
mismatches:
3
bulges:
1
View larger
pre-miRNA
CCAAGGCATG
GGTCTGGTTGGTGTCGCTAGAC
TCAATTGCCTTGCCCACCAGACTGAAGGATATGGGGTCTGGCTCCACAGCAAGACCTAATTGCATTTG
AGT
TTGGCTCCACCACCATACCCA
ATAGCTTTGG
dot-bracket secondary structure
(((((((.((
(((.((((.((((..(((((((
((((.(((........((........)).....((((((.(((....))).))))))....))).)))
)))
)))))..)))))))).)))))
...)))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10847-akr
:
4e-72
microPC
no hits
UniProt
no hits
RFAM
MIR474: 0.00003
Identical with:
ptc-miRf10425-akr
from PMRD (
MNEST052247
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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