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ABOUT THIS RECORD
ID:
MNEST052254
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10432-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCAACTTAATGCCTCTGTT
miRNA*
CAGAGGCATTAAGTTGCATA
mismatches:
0
bulges:
0
View larger
pre-miRNA
TCGTGCTAAAAA
CAGAGGCATTAAGTTGCATA
TTGCAGTTGAGATGTACTACTGACTATAGCAGGGGGCTGTCCATGCCCTTGCTCCATTCTGATCCAAC
TAAATGCAACAATA
TGCAACTTAATGCCTCTGTT
TTTAGCACGA
dot-bracket secondary structure
((((((((((((
((((((((((((((((((((
(((((((((.(((...(....).....((((((((.(.......)))))))))........)))))))
....))))...)))
))))))))))))))))))))
))))))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10853-akr
:
7e-77
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10853-akr
from PMRD (
MNEST052675
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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