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ABOUT THIS RECORD
ID:
MNEST052257
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10435-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGGAAGTTGACAGTTGGGCA
miRNA*
CCCAGAAGACAATTTCTCTAG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GTGCTG
CCCAGAAGACAATTTCTCTAG
CAGCACTTCTCGAGAATCATCTTCCACCTCTACTATAAGGAAGCTCGGAATCCTTGGAAGTAAAGACACAAGC
TGTGGACATTTCCTGATCTCAAGTGTTGTTAAAC
AGGGAAGTTGACAGTTGGGCA
GGAC
dot-bracket secondary structure
((.(((
(((((..(.((((((((((((
((((((((...((((.(((...(((((((.((((.((((((.........))))))..)))).))........
.))))).......)))))))))))))))))....
)))))))))).)..)))))))
).))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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