ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10443-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGATAGAAGATCCAGCAC miRNA* GCTGGATCTTCTACCACTAAT mismatches: 1 bulges: 0 |
pre-miRNA
GTTTTATAGGTGCTGGATCTTCTACCACTAATCATTAACTTCTTGAACTCTGGATAAGGGAACATTAAGGTGAATGTGTAATCACCCTTGGTGATTGGTG
ATAGAAGATCCAGCACCTGTAAAAC
dot-bracket secondary structure
((((((((((((((((((((((((.(((((((((((((.........((((.....))))........(((((........))))).)))))))))))))
.))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTTTTATAGGTGCTGGATCTTCTACCACTAATCATTAACTTCTTGAACTCTGGATAAGGGAACATTAAGGTGAATGTGTAATCACCCTTGGTGATTGGTG
ATAGAAGATCCAGCACCTGTAAAAC
dot-bracket secondary structure
((((((((((((((((((((((((.(((((((((((((.........((((.....))))........(((((........))))).)))))))))))))
.))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11818-akr: 8e-67 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10015-akr from PMRD (MNEST051837) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
