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ABOUT THIS RECORD
ID:
MNEST052277
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10455-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGCCCAATCCAATGTTGGGTC
miRNA*
CCCAACATCATGTTGGGCCAGG
mismatches:
6
bulges:
0
View larger
pre-miRNA
GCATCCGCG
CCCAACATCATGTTGGGCCAGG
ACGTATCCGTGCCTATCTTCAAGTTGGGCCATGACACGTCT
GTGCCCAATCCAATGTTGGGTC
AGGATG
T
dot-bracket secondary structure
((((((..(
((((((((...(((((((..((
((((.((...(((((.(.....).)))))...)).))))))
..)))))))...))))))))).
.)))))
)
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10907-akr
:
2e-51
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10907-akr
from PMRD (
MNEST052729
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record