ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10467-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGAGCCAGACAACATTCCC miRNA* GAATGAAGCCTGGTCCGACGA mismatches: 6 bulges: 0 |
pre-miRNA
TTGGGGGGAATGAAGCCTGGTCCGACGACCCTAACACATGATCTAAGATATTAGATCTAAAGATAGAACACTTGATCAGACTGATCAAGAAAGAGTCCTC
GAGCCAGACAACATTCCCCTCAA
dot-bracket secondary structure
.(((((((((((..(.((((..(((.(((.((.......(((((((....))))))).............(((((((.....)))))))..)).))).))
)..)))).)..))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TTGGGGGGAATGAAGCCTGGTCCGACGACCCTAACACATGATCTAAGATATTAGATCTAAAGATAGAACACTTGATCAGACTGATCAAGAAAGAGTCCTC
GAGCCAGACAACATTCCCCTCAA
dot-bracket secondary structure
.(((((((((((..(.((((..(((.(((.((.......(((((((....))))))).............(((((((.....)))))))..)).))).))
)..)))).)..))))))))))).
SIMILARITIES| miRBase ptc-MIR166c: 1e-65 PMRD ptc-miR166c: 1e-65 microPC miR166: 0.0000000004 | UniProt no hits RFAM mir-166: 2e-64 |
Identical with: ptc-MIR166c from miRBase (MNEST041324) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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