ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10469-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCGATTTCTGAATCAGCAGCGAA miRNA* GGCTGCTGATTTCTAAATCGGCAGC mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTGGCTGCTGATTTCTAAATCGGCAGCGATGCAGTTTTGCTGCCAATTTCTGAATCGACAGCGAAAAAGTTTTTGGCTACCGATTTCTGAATCGGCA
GCGACGCAGTTTTGATGTCGATTTATGAATCGACAGCAGAAGAGTTTTTGGTTGCCGATTTCTGAATCAGCAGCGAAAAA
dot-bracket secondary structure
.((((.(((((((((((..(((((((((((.(.((.((.((((((((.((((..((((((..(((.(((.....))).)))..))))))..)))).))))
)))).))..(((((.((((((((....)))))))).)))))..))...).)))))))))))..))))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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TTTTTGGCTGCTGATTTCTAAATCGGCAGCGATGCAGTTTTGCTGCCAATTTCTGAATCGACAGCGAAAAAGTTTTTGGCTACCGATTTCTGAATCGGCA
GCGACGCAGTTTTGATGTCGATTTATGAATCGACAGCAGAAGAGTTTTTGGTTGCCGATTTCTGAATCAGCAGCGAAAAA
dot-bracket secondary structure
.((((.(((((((((((..(((((((((((.(.((.((.((((((((.((((..((((((..(((.(((.....))).)))..))))))..)))).))))
)))).))..(((((.((((((((....)))))))).)))))..))...).)))))))))))..))))))))))).)))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10470-akr: 2e-34 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10470-akr from PMRD (MNEST052292) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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