ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10578-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGATGAACCGCTGCCTCC miRNA* ATGCAGAGGTTTATCGATCG mismatches: 2 bulges: 0 |
pre-miRNA
CGGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC
dot-bracket secondary structure
)((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC
dot-bracket secondary structure
)((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))
SIMILARITIES| miRBase ptc-MIR162a: 9.0E-54 PMRD ptc-miRf10577-akr: 9.0E-54 microPC miR162: 1.0E-43 | UniProt no hits RFAM 2MIR162_2: 2.0E-45 |
Identical with: ptc-miRf10577-akr from PMRD (MNEST052399), ptc-miR162a from PMRD , ptc-MIR162a from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
