ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10580-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCCGATTTCTGAATCGATAGC miRNA* CTGTCGATTTTTGAATCGGCAGCGA mismatches: 2 bulges: 1 |
pre-miRNA
TTTTTGGCTGTCGATTTTTGAATCGGCAGCGACATAATTTTTAGCTGCCGACAGCGGCACAGTTGGCTGTCGATTTCTAAATCAACAGCGACGCAGTTGT
GCTGCCGATTTCTGAATCGATAGCAAAAAA
dot-bracket secondary structure
((((((.((((((((((..(((((((((((.(((.........(((((.....)))))...((((.((((.((((....)))).)))))))).....)))
)))))))))))..)))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTTTTGGCTGTCGATTTTTGAATCGGCAGCGACATAATTTTTAGCTGCCGACAGCGGCACAGTTGGCTGTCGATTTCTAAATCAACAGCGACGCAGTTGT
GCTGCCGATTTCTGAATCGATAGCAAAAAA
dot-bracket secondary structure
((((((.((((((((((..(((((((((((.(((.........(((((.....)))))...((((.((((.((((....)))).)))))))).....)))
)))))))))))..)))))))))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10581-akr: 9e-70 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10581-akr from PMRD (MNEST052403) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
