ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10583-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCAACTCCAAGCCCAAGAG miRNA* CTTGGGTTTGTTGTTGCAGCC mismatches: 2 bulges: 0 |
pre-miRNA
CCAACGCTCTTGGGTTTGTTGTTGCAGCCAAACCCAAGGTTCTTGGGCCTGACGTTTCAACCACACTCAACGCTCTTTAGTCTGGCTGCAACTCCAAGCC
CAAGAGCCTTGG
dot-bracket secondary structure
((((.(((((((((((((..((((((((((..((((((...))))))...((((((............)))).)).......))))))))))..))))))
))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CCAACGCTCTTGGGTTTGTTGTTGCAGCCAAACCCAAGGTTCTTGGGCCTGACGTTTCAACCACACTCAACGCTCTTTAGTCTGGCTGCAACTCCAAGCC
CAAGAGCCTTGG
dot-bracket secondary structure
((((.(((((((((((((..((((((((((..((((((...))))))...((((((............)))).)).......))))))))))..))))))
))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11211-akr: 4e-59 microPC no hits | UniProt no hits RFAM MIR474: 1e-50 |
Identical with: ptc-miRf11211-akr from PMRD (MNEST053033) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
