ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10584-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCGAAATTCTGTTTCGCTG miRNA* GCGAAATTCTTTTTCGCTGCCG mismatches: 4 bulges: 0 |
pre-miRNA
GTTGCGCAGCGAAATTCTTTTTCGCTGCCGCAACTGAACCTCCTGCAGCGAATTGATATTCGCTGCCGATTTGTGTGTTGCGCAGCGAAATTCTGTTTCG
CTGCCGCAAC
dot-bracket secondary structure
(((((((((((((((....(((((((((.(((((...((...(.(((((((((....))))))))).)....))..))))))))))))))....))))))
))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTTGCGCAGCGAAATTCTTTTTCGCTGCCGCAACTGAACCTCCTGCAGCGAATTGATATTCGCTGCCGATTTGTGTGTTGCGCAGCGAAATTCTGTTTCG
CTGCCGCAAC
dot-bracket secondary structure
(((((((((((((((....(((((((((.(((((...((...(.(((((((((....))))))))).)....))..))))))))))))))....))))))
))).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10801-akr: 2e-55 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
