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ABOUT THIS RECORD

ID: MNEST052410
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10588-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGGAGATCGCCATATGGGATCTC

miRNA*
GATCACCGGATGGGATCTCAAGTTA

mismatches: 3
bulges: 3

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pre-miRNA
GGTTAAAGGGGATCACCGGATGGGATCTCAAGTTAACCCAACTATATAGATTTTGGTTCTGGTTAAAGGAGATCGCCATATGGGATCTCAGGATAGCC

dot-bracket secondary structure
(((((...((((((.(((.((((((((((...((((((.(((((.........)))))..))))))..)))))).)))).)))))))))....)))))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf10587-akr: 8e-51

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf10587-akr from PMRD (MNEST052409)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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