ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10591-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGCCTTTGGGTGAGATTGAGAG miRNA* CCCAATCTCCCTCAGAGGCTTCCA mismatches: 3 bulges: 0 |
pre-miRNA
CGGAGAAGCTCCCAATCTCCCTCAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGGTGAGATTGAGAG
CTTACTCC
dot-bracket secondary structure
)((((((((((.(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).))))))).)))
))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGGAGAAGCTCCCAATCTCCCTCAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGGTGAGATTGAGAG
CTTACTCC
dot-bracket secondary structure
)((((((((((.(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).))))))).)))
))).))))
SIMILARITIES| miRBase ptc-MIR477b: 5.0E-43 PMRD ptc-miRf10590-akr: 1.0E-56 microPC no hits | UniProt no hits RFAM 7MIR477: 6.0E-46 |
Identical with: ptc-miR477b from PMRD (MNEST051778), ptc-miRf10590-akr from PMRD , ptc-MIR477b from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
