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ABOUT THIS RECORD
ID:
MNEST052413
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10591-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATGCCTTTGGGTGAGATTGAGAG
miRNA*
CCCAATCTCCCTCAGAGGCTTCCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGAGAAGCT
CCCAATCTCCCTCAGAGGCTTCCA
ATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTG
GATGCCTTTGGGTGAGATTGAGAG
CTTACTCC
dot-bracket secondary structure
(((((((((
(.(((((((.(((((((((.((((
((((((((((((..(((....)))..))))..)))).))))))
)).))))))))).))))))).)))
))).))))
SIMILARITIES
miRBase
ptc-MIR477b
:
5e-43
PMRD
ptc-miRf10590-akr
:
1e-56
microPC
no hits
UniProt
no hits
RFAM
MIR477: 6e-46
Identical with:
ptc-miR477b
from PMRD (
MNEST051778
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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