ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10594-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCCGTCGGTAAATCCGTTGGT miRNA* CGACTGAATTACGGACGGAAAAG mismatches: 4 bulges: 0 |
pre-miRNA
ATCGGTAGTTACCGACTGAATTACGGACGGAAAAGTGTCCGTCGGTAATTTCGACCTCAAATTACCGACATAAATATTCCGTCGGTAAATCCGTTGGTATT
TAGCGA
dot-bracket secondary structure
)(((.(((.(((((((.((.((((.(((((((...(((..(((((((((((.(....)))))))))))))))....))))))).)))).)).))))))).)
)).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ATCGGTAGTTACCGACTGAATTACGGACGGAAAAGTGTCCGTCGGTAATTTCGACCTCAAATTACCGACATAAATATTCCGTCGGTAAATCCGTTGGTATT
TAGCGA
dot-bracket secondary structure
)(((.(((.(((((((.((.((((.(((((((...(((..(((((((((((.(....)))))))))))))))....))))))).)))).)).))))))).)
)).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12438-akr: 2.0E-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12095-akr from PMRD (MNEST053917), ptc-miRf12438-akr from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
