ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10609-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGAACCCATCAGAGTTGGG miRNA* CAAGTTTAAGTGGGTTTGACTG mismatches: 4 bulges: 1 |
pre-miRNA
GTTTACCCAAGTTTAAGTGGGTTTGACTGCATCACTAGGCTCAAGAGCTTTGAATATCAAACCCAAAAGCCTTGGGTCCAGCTGCAACCTGAACCCATCAG
AGTTGGGTGAG
dot-bracket secondary structure
).((((((((.(((..(((((((((..((((...((.((((((((.(((((..............))))))))))))).)).))))...))))))))).))
).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTTTACCCAAGTTTAAGTGGGTTTGACTGCATCACTAGGCTCAAGAGCTTTGAATATCAAACCCAAAAGCCTTGGGTCCAGCTGCAACCTGAACCCATCAG
AGTTGGGTGAG
dot-bracket secondary structure
).((((((((.(((..(((((((((..((((...((.((((((((.(((((..............))))))))))))).)).))))...))))))))).))
).)))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10330-akr: 5.0E-6 microPC no hits | UniProt no hits RFAM 4MIR474: 2.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
