ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10616-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGGGATCGCCAGATGGGATCTCA miRNA* GGATCGCCAGATGGGATCTCAGGTTA mismatches: 5 bulges: 3 |
pre-miRNA
GGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGCCCAACCACACACAGGATTTTGGTTCTGGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGC
C
dot-bracket secondary structure
((((((..((((((.(((..(((((((((...((((((.(((((............)))))..))))))..)))))).)))..)))))))))...)))))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGCCCAACCACACACAGGATTTTGGTTCTGGTTAAAGGGGATCGCCAGATGGGATCTCAGGTTAGC
C
dot-bracket secondary structure
((((((..((((((.(((..(((((((((...((((((.(((((............)))))..))))))..)))))).)))..)))))))))...)))))
)
SIMILARITIES| miRBase no hits PMRD ptc-miRf11720-akr: 1e-52 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11719-akr from PMRD (MNEST053541) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
