ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10617-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGACGGAATATGTCCGTCGGTAA miRNA* GCCGACGGACGTAATCCGTCGGTGA mismatches: 6 bulges: 0 |
pre-miRNA
AGGAAAGCCGACGGACGTAATCCGTCGGTGATGACGTCGGTAAATAAATCACCGACGAACTGCTAATCACACACAGACGGAATATGTCCGTCGGTAAAAC
T
dot-bracket secondary structure
......(((((((((((((.((((((.(((.((((((((((.........))))))).........))))))...)))))).))))))))))))).....
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
AGGAAAGCCGACGGACGTAATCCGTCGGTGATGACGTCGGTAAATAAATCACCGACGAACTGCTAATCACACACAGACGGAATATGTCCGTCGGTAAAAC
T
dot-bracket secondary structure
......(((((((((((((.((((((.(((.((((((((((.........))))))).........))))))...)))))).))))))))))))).....
.
SIMILARITIES| miRBase no hits PMRD ptc-miRf10657-akr: 1e-40 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
