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ABOUT THIS RECORD
ID:
MNEST052439
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10617-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACAGACGGAATATGTCCGTCGGTAA
miRNA*
GCCGACGGACGTAATCCGTCGGTGA
mismatches:
6
bulges:
0
View larger
pre-miRNA
AGGAAA
GCCGACGGACGTAATCCGTCGGTGA
TGACGTCGGTAAATAAATCACCGACGAACTGCTAATCACAC
ACAGACGGAATATGTCCGTCGGTAA
AAC
T
dot-bracket secondary structure
......
(((((((((((((.((((((.(((.
((((((((((.........))))))).........))))))
...)))))).)))))))))))))..
...
.
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10657-akr
:
1e-40
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
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