ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10620-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGACGGAATTGTTCCGTCGGT miRNA* CGACGAACGTAATCCGTTGGTGA mismatches: 2 bulges: 2 |
pre-miRNA
AGGAAAGCCGACGAACGTAATCCGTTGGTGATGACGTCGGTAAAAAAATCACCGACGAACTTCTAATCACACACCGACGGAATTGTTCCGTCGGTAAAAC
T
dot-bracket secondary structure
......(((((((((((...((((((((((.((((((((((.........))))))).........)))..))))))))))..)))).))))))).....
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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AGGAAAGCCGACGAACGTAATCCGTTGGTGATGACGTCGGTAAAAAAATCACCGACGAACTTCTAATCACACACCGACGGAATTGTTCCGTCGGTAAAAC
T
dot-bracket secondary structure
......(((((((((((...((((((((((.((((((((((.........))))))).........)))..))))))))))..)))).))))))).....
.
SIMILARITIES| miRBase no hits PMRD ptc-miRf10852-akr: 1e-28 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
