ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10623-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCGAAATTCTGTTTCGCTG miRNA* GCGAAATTCTGTTTCGCTGCCGC mismatches: 3 bulges: 1 |
pre-miRNA
GTTGCGCAGCGAAATTCTGTTTCGCTGCCGCAACTGAACCTGCTGCAGCGAATTAATATTCGCTGCCGATTTGTGTGTTGCGCAGCGAAATTCTGTTTCG
CTGCCGCAAC
dot-bracket secondary structure
(((((((((((((((...((((((((((.(((((...((...(.(((((((((....))))))))).)....))..)))))))))))))))...))))))
))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTTGCGCAGCGAAATTCTGTTTCGCTGCCGCAACTGAACCTGCTGCAGCGAATTAATATTCGCTGCCGATTTGTGTGTTGCGCAGCGAAATTCTGTTTCG
CTGCCGCAAC
dot-bracket secondary structure
(((((((((((((((...((((((((((.(((((...((...(.(((((((((....))))))))).)....))..)))))))))))))))...))))))
))).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11897-akr: 6e-58 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10730-akr from PMRD (MNEST052552) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
