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ABOUT THIS RECORD
ID:
MNEST052446
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10624-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AACCGAATCGAAACCGGTCG
miRNA*
ACCGGTTCGGTTCGGTTTT
mismatches:
0
bulges:
1
View larger
pre-miRNA
AAACCG
ACCGGTTCGGTTCGGTTTT
GGTTTTATAAGCCTGAAACCGAAAAAACCAAACCGAACTCAAACCGAACCCAAACCGGAAAAAAAACCGAGCCAA
ACCGGTTTGAACCGGTTTTTGTCTTAAAAAACTA
AACCGAATCGAAACCGGTCG
GTTT
dot-bracket secondary structure
((((((
((((((((((((((((((.
((((((.((((.(.(((((((.......(.....)...((((((((.........(((........)))......
..))))))))..))))))).).)))).)))))))
)))))))))).)))))))))
))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12126-akr
:
2e-24
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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