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ABOUT THIS RECORD
ID:
MNEST052447
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10625-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGTCGACCCGGTGGGTCGACCCG
miRNA*
GACCGGCCCGGTGGGTCGACCTG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CTCG
GACCGGCCCGGTGGGTCGACCTG
GGACCTGGCCGACCCGGGACCTGGACCGATCCGGGTAAGACAAAAGACCGGCCTAAGGAAAAAACCGGTCAAA
CCC
GGTCGACCCGGTGGGTCGACCCG
TG
dot-bracket secondary structure
..((
(..(((((((.((((((((((.(
((.(((((.....)))))(((((((....))))))).........((((((.............))))))...
)))
)))))))))).)))))))..)))
..
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10802-akr
:
0.00000000000003
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
download this record