ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf907
source: PMRD, original name: ptc-miRf10626-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCAGGTTTTGCATGCTCT miRNA* GGGCATGCACTCTTGTTGCCA mismatches: 2 bulges: 2 |
pre-miRNA
TGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCA
dot-bracket secondary structure
.((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCA
dot-bracket secondary structure
.((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P46689|GASA1_ARATH: 0.0000000009 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
