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ABOUT THIS RECORD
ID:
MNEST052450
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10628-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTGGACTTGGCTAACTGCCAAGTTC
miRNA*
ACTTGGTTGACTGCCAAGTCCAAGCG
mismatches:
5
bulges:
0
View larger
pre-miRNA
CTTGG
ACTTGGTTGACTGCCAAGTCCAAGCG
TTTTAGGTTTAACATGTGTGCCATACTTACATTCCTTGGACGTGGCTGACTGCCAAGCCAAGTCTAAAC
GTCTTAGGTTTGACATGTGTGCCAAACCCACGTTC
CTTGGACTTGGCTAACTGCCAAGTTC
AAG
dot-bracket secondary structure
(((((
(((((((.....((((((((((((((
(....(((((..((((..((.((.(((((......((((((.(((((........))))).))))))..
....))))).)).))..))))..))))).)))...
)))))))))))).....)))))))))
)))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10243-akr
:
0.00000003
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record