ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10629-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCTTGGACTGAAGGGAGC miRNA* TTCCTTCAGTCCACTCATGG mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTTCCTTCAGTCCACTCATGGACGGGCGAAGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGACAAGGAGTGGCAGCGGCTGCTATT
GTGAATGTGTGAATGACGCGGGAGATTAATTTCATCCTTTTCTTCTCTGTGCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((((((((((..((((((..((.(((((((..(((((((((.(((..((((((((.((..((((((((...((..((....))..)).)))))
)))..)).))))))))..))).)).))))))).))))))).))..))))))..)))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAGCTTCCTTCAGTCCACTCATGGACGGGCGAAGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGACAAGGAGTGGCAGCGGCTGCTATT
GTGAATGTGTGAATGACGCGGGAGATTAATTTCATCCTTTTCTTCTCTGTGCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((((((((((..((((((..((.(((((((..(((((((((.(((..((((((((.((..((((((((...((..((....))..)).)))))
)))..)).))))))))..))).)).))))))).))))))).))..))))))..)))))))))))))))))
SIMILARITIES| miRBase ptc-MIR319d: 2e-93 PMRD ptc-miR319d: 2e-93 microPC miR319: 0.0000000001 | UniProt no hits RFAM MIR159: 3e-92 |
Identical with: ptc-miR319d from PMRD (MNEST051710) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
