ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10748-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCCGCCGGGTCGACCCAT miRNA* GGGTCGATCCGGTGGCTGGA mismatches: 3 bulges: 0 |
pre-miRNA
GCTCGGTGGGTCGATCCGGTGGCTGGACAGATCCTGGTAAGGCAAAATATCAGACTAAGGAAAAACCTGGCAAAACATGGTTGACCCGCCGGGTCGACCC
ATTACCCGAGC
dot-bracket secondary structure
((((((((((((((((((((((.(.(((.....((((((........))))))....(((.....)))...........))).).)))))))))))))))
)....))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GCTCGGTGGGTCGATCCGGTGGCTGGACAGATCCTGGTAAGGCAAAATATCAGACTAAGGAAAAACCTGGCAAAACATGGTTGACCCGCCGGGTCGACCC
ATTACCCGAGC
dot-bracket secondary structure
((((((((((((((((((((((.(.(((.....((((((........))))))....(((.....)))...........))).).)))))))))))))))
)....))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12496-akr: 0.0003 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
