ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10754-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACTCGGTAAGATCGAGGTC miRNA* CCTCGATCTTACCGAGTTAAT mismatches: 0 bulges: 0 |
pre-miRNA
TGTGGATATGACCTCGATCTTACCGAGTTAATTGCTACATCGCACACTCGTGCACTTGAGAGTTAAAACAAGCCAATCATAAAAAGCGGTCAAGCAATTT
TGGTGCCGCTGCAATTAACTCGGTAAGATCGAGGTCATATCCACA
dot-bracket secondary structure
.((((((((((((((((((((((((((((((((((......((((....))))...(((..(((......)))...))).....((((((((((....))
))..)))))))))))))))))))))))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TGTGGATATGACCTCGATCTTACCGAGTTAATTGCTACATCGCACACTCGTGCACTTGAGAGTTAAAACAAGCCAATCATAAAAAGCGGTCAAGCAATTT
TGGTGCCGCTGCAATTAACTCGGTAAGATCGAGGTCATATCCACA
dot-bracket secondary structure
.((((((((((((((((((((((((((((((((((......((((....))))...(((..(((......)))...))).....((((((((((....))
))..)))))))))))))))))))))))))))))))))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10331-akr: 1e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10331-akr from PMRD (MNEST052153) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
