ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10783-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGACGAATCCATTCGTCAC miRNA* TGACGAATCCATTCGTCACCT mismatches: 2 bulges: 2 |
pre-miRNA
TTGTGGGCTGACGAATCCATTCGTCACCTGTGAAAGCATTTTCGGGGGCTATTTCTGAGTGGGCAGCGACTCAGTTTTCCTTGACTGTTTATGAGTGAAC
TGTGGCTGTGTGGGCTGACGAATCCATTCGTCACCTGTGA
dot-bracket secondary structure
(..((((.((((((((..((((((((((..(...(((....(((((((......((((((.(....).))))))...)))))))..(((((....)))))
....)))..)..)).))))))))..))))))))))))..)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TTGTGGGCTGACGAATCCATTCGTCACCTGTGAAAGCATTTTCGGGGGCTATTTCTGAGTGGGCAGCGACTCAGTTTTCCTTGACTGTTTATGAGTGAAC
TGTGGCTGTGTGGGCTGACGAATCCATTCGTCACCTGTGA
dot-bracket secondary structure
(..((((.((((((((..((((((((((..(...(((....(((((((......((((((.(....).))))))...)))))))..(((((....)))))
....)))..)..)).))))))))..))))))))))))..)
SIMILARITIES| miRBase no hits PMRD ptc-miRf12462-akr: 2e-58 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
