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ABOUT THIS RECORD
ID:
MNEST052610
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10788-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTAACCCTAAGGGACCCCCT
miRNA*
GGGGGTCAGTTAGGGTTTCTTT
mismatches:
5
bulges:
1
View larger
pre-miRNA
AGTCCACCTAAG
GGGGGTCAGTTAGGGTTTCTTT
AAATGACTCTAAACTTAT
ATTAACCCTAAGGGACCCCCT
TAGGTGGACT
dot-bracket secondary structure
((((((((((((
((((.((..((((((((....(
((.(........).))).
...))))))))..))))))))
))))))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12403-akr
:
6e-42
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11636-akr
from PMRD (
MNEST053458
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
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