ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf469
source: PMRD, original name: ptc-miRf10804-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGTAATCCCAGCACTTTGG miRNA* AAAGTGCTGGGATTATAGGTG mismatches: 0 bulges: 0 |
pre-miRNA
CCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGAACCACCATGCCTGCTTGGGATATTTAATATATTCTCTGGAATATGAAAGACCAAAGGGCAAAAA
AATAGCTAAGACACACTCTTGAAGAGAAAGAACAAGACTATTCTGCAGGAAAATATGAAAATAAGCTCAACTGCCGGGCGCGGTGGCTCACACCTGTAAT
CCCAGCACTTTGGGAGGCCAAGG
dot-bracket secondary structure
(((..(((((((((((((((((((((((((((((((.(((((.((((((.((((....(((..(((((((....))))))))))..)))).((((.....
................(((((...((((((.......)).)))).)))))...(((....))).))))......)))))).))))).)))))))))))))
))))))))))))))))))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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CCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGAACCACCATGCCTGCTTGGGATATTTAATATATTCTCTGGAATATGAAAGACCAAAGGGCAAAAA
AATAGCTAAGACACACTCTTGAAGAGAAAGAACAAGACTATTCTGCAGGAAAATATGAAAATAAGCTCAACTGCCGGGCGCGGTGGCTCACACCTGTAAT
CCCAGCACTTTGGGAGGCCAAGG
dot-bracket secondary structure
(((..(((((((((((((((((((((((((((((((.(((((.((((((.((((....(((..(((((((....))))))))))..)))).((((.....
................(((((...((((((.......)).)))).)))))...(((....))).))))......)))))).))))).)))))))))))))
))))))))))))))))))..)))
SIMILARITIES| miRBase hsa-mir-3929: 0.00000000005 PMRD ptc-miRf12412-akr: 0.00000000000005 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 4e-21 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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