ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10809-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTACCGACGGATTTACCGA miRNA* GGTAAATCCGTTGGTAATAAA mismatches: 0 bulges: 0 |
pre-miRNA
TTCTGTCGGTAAATCCGTTGGTAATAAAAAAATAAATTTATCTGCTTCATTTCGTCGGTATATCCCTCGGTAATAATATTTTTTTATTACCGACGGATTT
ACCGATGGAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((((((((...(((((.((........)).((......))..)))))...))))))))))))))))))))))))
))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCTGTCGGTAAATCCGTTGGTAATAAAAAAATAAATTTATCTGCTTCATTTCGTCGGTATATCCCTCGGTAATAATATTTTTTTATTACCGACGGATTT
ACCGATGGAA
dot-bracket secondary structure
.(((((((((((((((((((((((((((((((((...(((((.((........)).((......))..)))))...))))))))))))))))))))))))
))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10689-akr: 1e-25 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
