ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10814-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATTAAGCATGTCTCGATACC miRNA* TATCGAGACTTGCTTAATACTT mismatches: 3 bulges: 0 |
pre-miRNA
ATGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATTAAGCATG
TCTCGATACCAATCCCAACA
dot-bracket secondary structure
).((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))))))).)
))))))))...)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
ATGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATTAAGCATG
TCTCGATACCAATCCCAACA
dot-bracket secondary structure
).((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))))))).)
))))))))...)))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11699-akr: 8.0E-64 microPC no hits | UniProt no hits RFAM 1snoR71: 1.0E-13 |
Identical with: ptc-miRf10393-akr from PMRD (MNEST052215), ptc-miRf10392-akr from PMRD , ptc-miRf10805-akr from PMRD , ptc-miRf10806-akr from PMRD , ptc-miRf10813-akr from PMRD , ptc-miRf11688-akr from PMRD , ptc-miRf10381-akr from PMRD , ptc-miRf10382-akr from PMRD , ptc-miRf11699-akr from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
