ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10818-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGGGCTGTTTGTGCTCTCGAAT miRNA* TCGTTGGTGATATACGAGTGCCTAGG mismatches: 4 bulges: 2 |
pre-miRNA
TGACAGCAGTTCGTTGGTGATATACGAGTGCCTAGGGGCTGTTTGGGCTGTTGAATCCCTGCATCACCCGTGACAGCAGTTCGTTGATGCTTTCTGAGTC
CCTAGGGGCTGTTTGTGCTCTCGAATACATGCGTCA
dot-bracket secondary structure
.(((.((((((((..(((.(((.((.(((.((((((((((....((((.((..(....((((.(((....)))..))))....)..))))))....))))
)))))).))))).))))))..)))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
TGACAGCAGTTCGTTGGTGATATACGAGTGCCTAGGGGCTGTTTGGGCTGTTGAATCCCTGCATCACCCGTGACAGCAGTTCGTTGATGCTTTCTGAGTC
CCTAGGGGCTGTTTGTGCTCTCGAATACATGCGTCA
dot-bracket secondary structure
.(((.((((((((..(((.(((.((.(((.((((((((((....((((.((..(....((((.(((....)))..))))....)..))))))....))))
)))))).))))).))))))..)))))...)))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10758-akr: 6e-28 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
