ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10825-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCCGATTCAGAAATCGGTAGCGA miRNA* GCTGTCGATTCAGAAATCGGCAGCC mismatches: 7 bulges: 0 |
pre-miRNA
GCAGTGTCGCTGTCGATTCAGAAATCGGCAGCCATAAACTGTGGCACTGCCGATTCAGAAATCGGTAGCGAGAATTG
dot-bracket secondary structure
)((((.(((((..(((((....(((((((((((((.....)))))..))))))))....)))))..)))))..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GCAGTGTCGCTGTCGATTCAGAAATCGGCAGCCATAAACTGTGGCACTGCCGATTCAGAAATCGGTAGCGAGAATTG
dot-bracket secondary structure
)((((.(((((..(((((....(((((((((((((.....)))))..))))))))....)))))..)))))..))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11580-akr: 8.0E-38 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11580-akr from PMRD (MNEST053402), ptc-miRf10755-akr from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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