ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10829-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGACCCAATAGTCTTGGA miRNA* CAAGAATCTTGGGTTTGGCT mismatches: 4 bulges: 0 |
pre-miRNA
GTATACCCAAGAATCTTGGGTTTGGCTGCAACGCCTGACCTAAGAGTGATATTTATAATATTAATAATAATATTAAACTTGCATGACCCAAGTTTAAATGG
GTCTAGCTGCAATACCAGACCCAATAGTCTTGGATGTG
dot-bracket secondary structure
)((((.((((((...((((((((((.((((..((..((((((....((((((.....)))))).........(((((((((.......))))))))).)))
)))..))))))...))))))))))...)))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
GTATACCCAAGAATCTTGGGTTTGGCTGCAACGCCTGACCTAAGAGTGATATTTATAATATTAATAATAATATTAAACTTGCATGACCCAAGTTTAAATGG
GTCTAGCTGCAATACCAGACCCAATAGTCTTGGATGTG
dot-bracket secondary structure
)((((.((((((...((((((((((.((((..((..((((((....((((((.....)))))).........(((((((((.......))))))))).)))
)))..))))))...))))))))))...)))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12497-akr: 2.0E-74 microPC no hits | UniProt no hits RFAM 4MIR474: 5.0E-7 |
Identical with: ptc-miRf12497-akr from PMRD (MNEST054319) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
