ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10869-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGTGCGTTGAACGGGACGGA miRNA* CGGACTGTGAGCGCCGTGAG mismatches: 4 bulges: 2 |
pre-miRNA
GCTTTCCATGTGCGTTGAACGGGACGGAGCCGCCAGTGTGCGTGGTCACCGAACCATGATTTTTCCGGTTCCGGTTGTCGGCGCCGGACTGTGAGCGCCG
TGAGAACCGC
dot-bracket secondary structure
((.(((((((.(((((..((((..(((.((((.((.....((((((......))))))......(((....))).)).)))).)))..)))).)))))))
)).)))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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GCTTTCCATGTGCGTTGAACGGGACGGAGCCGCCAGTGTGCGTGGTCACCGAACCATGATTTTTCCGGTTCCGGTTGTCGGCGCCGGACTGTGAGCGCCG
TGAGAACCGC
dot-bracket secondary structure
((.(((((((.(((((..((((..(((.((((.((.....((((((......))))))......(((....))).)).)))).)))..)))).)))))))
)).)))..))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11455-akr: 3e-32 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
