ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10892-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCCGTCGGTATATACCGAC miRNA* CGGTATATATTACCGACGGAAAAA mismatches: 1 bulges: 3 |
pre-miRNA
TGACGGGTTTATTCCGTCGGTATATACCGACAGATTTTGAGACGGAATTATTTCTGTCGGTATATATTACCGACGGAAAAATTCCGTCA
dot-bracket secondary structure
.(((((..((.(((((((((((((((((((((((...(((.......)))..))))))))))))...))))))))))).))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGACGGGTTTATTCCGTCGGTATATACCGACAGATTTTGAGACGGAATTATTTCTGTCGGTATATATTACCGACGGAAAAATTCCGTCA
dot-bracket secondary structure
.(((((..((.(((((((((((((((((((((((...(((.......)))..))))))))))))...))))))))))).))..))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12272-akr: 9e-35 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
